generate pdf and rename folder

notebooks/walker/Step_5_reproducibility/plotting.py

@@ -1,22 +0,0 @@
-import matplotlib.pyplot as plt
-import numpy as np
-
-
-def plot_trajectory(trajectory, context_map):
-    """ Plot a trajectory over a context map. """
-    trajectory = np.asarray(trajectory)
-    plt.matshow(context_map)
-    plt.plot(trajectory[:, 1], trajectory[:, 0], color='r')
-    plt.show()
-
-
-def plot_trajectory_hexbin(trajectory):
-    """ Plot an hexagonal density map of a trajectory. """
-    trajectory = np.asarray(trajectory)
-    with plt.rc_context({'figure.figsize': (4, 4), 'axes.labelsize': 16, 
-                         'xtick.labelsize': 14, 'ytick.labelsize': 14}):
-        plt.hexbin(trajectory[:, 1], trajectory[:, 0], gridsize=30,
-                   extent=(0, 200, 0, 200), edgecolors='none', cmap='Reds')
-        plt.gca().invert_yaxis()
-        plt.xlabel('X')
-        plt.ylabel('Y')