2.7 KiB
2.7 KiB
Exercise: Add experiment information to electrophysiology data¶
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import pandas as pd
# Set some Pandas options: maximum number of rows/columns it's going to display
pd.set_option('display.max_rows', 1000)
pd.set_option('display.max_columns', 100)
Load electrophysiology data¶
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df = pd.read_csv('../../data/QC_passed_2024-07-04_collected.csv')
info = pd.read_csv('../../data/op_info.csv')
1. Add experiment information to the electrophysiology results¶
- Is there information for every experiment?
- How many experiments did each patcher perform? (i.e., individual OPs, or rows in
info) - How many samples did each patcher analyze? (i.e., individual rows in
df)
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2. Remove outliers from the table¶
- Load the list of outliers in
outliers.csv - Use an anti-join to remove the outliers from the table
- How many samples (rows) are left in the data?
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3. Save final result in processed_QC_passed_2024-07-04_collected_v1.csv¶
- Using the
.to_csvmethod of Pandas DataFrames
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